Genome-wide RNAi screen to identify essential factors for nuclear mRNA export in Drosophila

Genome-wide RNAi screen to identify essential factors for nuclear mRNA export in Drosophila - List of Reported Hits by Natalie Farny

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Final Hit	HFA Amplicon	DRSC Amplicon	"S" Primer	"R" Primer	Amp. Length	Gene	19 bp Matches	CAR
3	HFA00535	DRSC00535	TGGCCAAGGCTGTAATTGT	GTCATTTATTAGTGAAGGTAATTGA	480	CG2807	0	No
3	HFA00646	DRSC00646	CAACGCATCCAGAGCTGT	GATGACCCTAACGCCAAGA	495	tho2	1	No
1	HFA02455	DRSC02455	CCGATTCCGGCATGGC	CAGCAGTAAAGCACTTTCAA	510	Socs36E	2	No
3	HFA02680	DRSC02680	GGGACTGACGTTCTGTATGA	TCAAAGGAAATCCCAAGGTG	266	CG18591	0	No
3	HFA03028	DRSC03028	CCACATAGACGCCCTCAT	GTGTGTCCTATGTGAGCCC	255	CG7214	1	No
3	HFA03287	DRSC03287	CTTGGTGTGCAAACTTGTCT	TGGTGATTTCAATGTCATCAAC	508	Cas	0	No
3	HFA03296	DRSC03296	TTGAATCGCTGCTTAAACG	TTGTTCTACCAGCAGCACT	329	CycE	0	No
3	HFA03342	DRSC03342	TATGTAGAGAGATCGATTTCCT	GGTCATCTTTGTGAAGTCTGT	399	Hel25E	1	No
3	HFA03384	DRSC03384	GGACTTATGGGCTGATTGAAC	GCCTGGATGGAGTTGTTTG	520	Nup154	0	No
3	HFA03417	DRSC03417	GTTGGAGGCGTACTTGAAG	AAGGCCGCCGTGATTG	577	RpL7	1	No
1	HFA03420	DRSC03420	TACTTCCTGTTCTGGTTGTTG	ACCAAGAAGCGCCGTAA	341	RpS26	0	No
3	HFA03528	DRSC03528	CCAATGGCCCAGCACAAC	AGGAGCACGGCAAACTG	499	emb	0	No
3	HFA03609	DRSC03609	AGATGAGCGAGGAGTACG	CTCCCGCCTGCGTTTTT	495	sip1	2	No
1	HFA04324	DRSC04324	CCGTCACATCGGTGACAA	CTCCATGCCGAGTGCTAT	502	CG2921	1	No
3	HFA04344	DRSC04344	ATTCCGCGGGGACTTCA	AAGCACAGTGGAAACATTGG	202	RpL12	0	No
3	HFA04414	DRSC04414	TGCCAGTGCCGATCTTG	GTCCGGTACAACCGCTAC	386	RpS24	0	No
1	HFA04442	DRSC04442	AACGGTACGACTTCTGGTA	GAGGCCTCCAAGAAGGAG	136	RpS16	1	No
3	HFA04577	DRSC04577	GTGGAATGCGATGTCATTTAC	GGTGAAGCTCTGGGACCT	560	Rae1	0	No
3	HFA04630	DRSC04630	ACCTCCTGCATTCGGTAG	TGGACGCCTCTATTTGGAC	297	Nxt1	0	No
3	HFA04658	DRSC04658	TTGTCCGAATCACCAAAGTC	TCCCGATGAGGAGACCAC	501	Ssrp	1	No
3	HFA04718	DRSC04718	CATTTCTGGATATCTTCTAGAAAC	TGGTGTAACTGTGTCTGATGT	168	tsr	0	No
3	HFA05086	DRSC05086	AGATGACCTTTCGGGAAATG	CTAGAGAAAGGTCAAAACAGC	514	CG30376	0	No
1	HFA06003	DRSC06003	CATGTCGGCCATGACATAAC	CTCGGTGGTGGTCTTTGG	217	synaptogyrin	0	No
1	HFA06259	DRSC06259	ATGTTGCCTTTTCCTTAGCC	CGAGTCCCGTAGTCTAAGT	481	Fs	20	No
3	HFA06445	DRSC06445	GCTGGCCCGCTTGATG	ACTTGTCCGACAACGATCT	518	U2A	1	No
3	HFA06811	DRSC06811	CATCTCCGTTTTCTGGACC	CAGCGTCCTCTAGTGAAGA	497	CG2063	0	No
3	HFA07247	DRSC07247	TGATCGCTTATCATCGTATATTA	CCGCGCGAACGACTT	418	lig	48	No
3	HFA07249	DRSC07249	CTGCCTCTACGGCTTCC	CACCAGCCGGCTTATGA	514	CG11198	0	No
3	HFA07397	DRSC07397	CGCATTTCGCCCTCCT	CCCAAGCCCTTCCTGAAC	236	DebB	6	No
3	HFA07501	DRSC07501	GCCCTCGGAAGAGGGTT	GGCAGCATGCAAATCGAC	385	Pabp2	0	No
3	HFA07533	DRSC07533	ACATCAGCACGGCAAAGT	GATTTGTCCAAGGACCTTACT	508	RnrS	1	No
3	HFA07553	DRSC07553	TGTGCGCGCAGAATGG	TATCGGAGTGCCCATTAAAG	312	SmD3	1	No
3	HFA10559	DRSC10559	TGTGGCTCTAGATCGTAAAG	GCCTCTCACTATTACCTAACC	515	CG5931	0	No
3	HFA10696	DRSC10696	TTGGGCTGCGCTTCATT	ATCCATATCAATCCGCACTTT	500	ZC3H3	1	No
3	HFA10822	DRSC10822	CCATAGCCAGATCGAGAAAC	GTGTGCCTGGATCTAAGGTA	514	PCID2	2	No
3	HFA10953	DRSC10953	AGGTGGCTGGACTGAGATA	CCCGCCAAAGGAGCTAAT	515	Mtr3	4	No
3	HFA11234	DRSC11234	GGTCGTTCTGCAAACTGGT	GTCACAATAGTATAGAGGACAATA	418	Nedd4	1	No
3	HFA11272	DRSC11272	GGGATAGGTGGGGTCGGT	CTCGTGGCCCCAAGAAG	245	RpS4	0	No
3	HFA12227	DRSC12227	GCCCTGGATCACCAGTTTA	CAGGACGGAGATGGCAC	510	CG14641	1	No
3	HFA12296	DRSC12296	GTGCATCGCCCAATGGAC	GAAGACGTGCGCCAAAG	566	Hpr1	0	No
3	HFA12355	DRSC12355	GTTCGCATCACTGGTCCC	GACTGCCCGAAAAATATATTGA	485	Karybeta3	0	No
3	HFA12383	DRSC12383	CTCTCTGCTCAGACAACAG	GACCACGTCTTCGATATTCC	520	noi	1	No
1	HFA12504	DRSC12504	ACCATTTGCTCGAATGTGAA	TTCTAAACTACATCCTTGATCATA	514	MAGE	0	No
1	HFA12726	DRSC12726	TATGCTCCTTTAGCTCCTTG	GGTGGTTTTAGAAACTGCCA	140	pum	0	No
3	HFA14210	DRSC14210	CAGGCGGTGCTTGGAG	CAGAGGGAACGTGCAGTT	574	Nup98	0	No
3	HFA14410	DRSC14410	TTCACGGTTTCCTTCGACT	GAAGCTGAGCAAAACCAAAG	512	Nup358	0	No
3	HFA14623	DRSC14623	TGATGAGCGTCAGATCGT	GCAGGAGGCGGGACAG	182	CG31126	0	No
3	HFA14923	DRSC14923	CTTCTCGAGCTTCAGGTC	GGTGGAGATCGAGGACTTC	376	CG14701	3	No
1	HFA15803	DRSC15803	TCGTTCACAAAGGAGGAATG	GCAAGGCGGCGATGAA	496	CG5451	0	No
3	HFA16223	DRSC16223	GCATCTCCCTTGGAAGACT	TTATCGTTGTATATCGTCAACAT	508	Rrp6	0	No
3	HFA17071	DRSC17071	AGCGGCAGTCGATGATG	GGCCAGATCAAGGAGCAG	517	stg	5	No
3	HFA17168	DRSC17168	CTGTACTGGGGGCTCATAAC	ATGGTTAAAAAGTGGCAAACAC	450	RpS3A	0	No
3	HFA17743	DRSC17743	TTTGGCGTTCTTCCAGTTC	TGGACGACAAGGGAAAGG	506	Bx42	1	No
1	HFA17831	DRSC17831	CTGTACTCGATCTTGGTGAAT	AGCCAGGATCCGTGACG	319	CG12236	1	No
3	HFA18188	DRSC18188	TCTCAACGTGGTTCTCTACT	TGAGGTAAATGTAGAGCTTTTC	191	pcx	0	No
3	HFA18190	DRSC18190	CTGCAGCGCCACAGAA	CAAGCATCCGCCACTCC	224	pcx	1	No
3	HFA18463	DRSC18463	GGTGTCGCTGTAGATGATTT	TGTCCAGAAATAGCGATTTAG	511	CG2685	4	No
3	HFA18707	DRSC18707	GCCACATCCATGATGCTATC	CGGCCAAGAACGTGAAG	481	RpL22	8	No
3	HFA18708	DRSC18708	ACTTGGCGTGGGTCTGG	GCTACGAGCTGGCTATTG	400	RpL36	0	No
3	HFA18711	DRSC18711	AGAGTCCGATGGGATAGGG	TGGCTCCAAGAAAGGCTAA	475	RpS14b	1	No
3	HFA19904	DRSC19904	CGCGTGAAGGAAATATCAAA	ATCGATTCAAGAAATCGACG	499	Nup153	0	No
3	HFA20233	DRSC20233	CCATTCGGCGACAATTTTG	GTTTGAACAAACGACAGCAG	509	CycD	16	No
3	HFA20280	DRSC20280	TCGTTGGCCTGCTTTGAA	CTATGGAGTCGGTGATGGTT	505	RpII215	1	No
3	HFA20346	DRSC20346	GCAGCCGCGACAACC	CCGCAGTCGCAAACCA	493	l(1)10Bb	0	No
1	HFA20364	DRSC20364	CTGCGCCTGCCAATCC	TCAAGCGGCACATGACC	587	ran	1	No
3	HFA20368	DRSC20368	TTGTTATCCCCCAAATAGAGAA	AACGCCCAGATATACGAAAA	515	sbr	1	No
3	HFA21306	DRSC21306	AGTCGATAGCGTCTGCTT	GTGCGTCAGCAGAAACTC	509	xmas-2	1	No
3		DRSC21561	ATAGTATTTTTTAACATTAAAAGCCT	TGACAACTTTTTGGTGCGAC	555	CG32267	1	No
3		DRSC21805	ACTCAAAGATGTCTACTTCGG	CTGCATGGAGCAACTGATC	503	Cap-G	0	No
3		DRSC21831	GCCGCCCATCTGGTTCA	CCATTCCCTTTCAATCCCAC	489	swm	0	No
3		DRSC22110	GCAATGGCCAGCAGATTC	TCAAGGGCAACGTGGGAT	511	RpLP0	0	No
3		DRSC22178	AACTCCAAAGTCCTGGTCTG	CCACCAGCAGTCTCAAAAC	494	xmas-2	0	No
3		DRSC22323	ATGCCGAATCCAGTCCAG	TCAGCGCCGCACCAA	493	RpL18	0	No
3		DRSC22648	GAGGAGTACGGATCGAAGA	ACGGAGGCGACGGAAA	512	sip1	2	No
3		DRSC23346	GCATAGCTGTCTTCGCTTCC	AGTACCCACAAGCAAAACCG	518	Pitslre	0	No
3		DRSC26365	AGCCGTACAGCTCCTTGAAA	GTTATCGAATGGCGCTTTGT	325	Nedd4	0	No
3		DRSC26396	AGCTCGATCACTCCCTCAAA	CAGCTGATATGCGTGCAACT	386	Nup154	0	No
3		DRSC26956	CAGAGCAGCTCCTCAACCTT	CTATGTGAATTTTGCGGCCT	315	Mtr3	0	No
1		DRSC28160	GCAAGTTCTTCTTTCGGTGG	CCGGTGAGTTCGAGAAGAAG	339	ran	0	No
3		DRSC28626	GGGCCTTAATATCCCGTTGT	GCAATCGCCTGTATGAGGAT	441	tho2	0	No
3		DRSC29290	TCCTGGTCCCTGACAATCTC	CATCTGTGCAAGCCCCTTAT	350	PCID2	0	No
3		DRSC29772	TGTTGGTGGCGTAAAATTGA	CCCAACATGTCTACCTGGCT	550	Nup358	0	No
3		DRSC29959	TTGCTCTTCTTCTTGGCAGG	GAAAATCCGGGCATAAAGGT	329	Ssrp	0	No

Select Columns To Display:
Assay Plate Information
Details ?
Results Information
Phenotype
Final Hit ?
Amplicon Information
HFA Amplicon ID ?
DRSC Amplicon ID ?
"S" Primer ?
"R" Primer ?
Amplicon Length(s) ?
Hits in Public Screens ?
Chromosomal Location Information
Number of Chromosome Locations ?
Chromosome Locations ?
Chromosome ?
Chromosome Start ?
Chromosome Stop ?
Gene Information
Gene Symbol ?
Flybase Gene ID ?
Deprecated Flybase Gene IDs ?
Gene Name ?
Gene Synonyms ?
NCBI Nucleotide Accessions ?
Entrez Gene / LocusLink Identifiers ?
UniGene Identifiers ?
RefSeq RNA Accessions ?
HomoloGene Group Identifiers ?
Homo sapiens Gene(s) via Homologene ?
Mus musculus Gene(s) via Homologene ?
Caenorhabditis elegans Gene(s) via Homologene ?
Saccharomyces cerevisiae Gene(s) via Homologene ?
Homo sapiens Putative Orthologues According to InParanoid ?
Mus musculus Putative Orthologues According to InParanoid ?
Caenorhabditis elegans Putative Orthologues According to InParanoid ?
Saccharomyces cerevisiae Putative Orthologues According to InParanoid ?
Misc. Organism Putative Orthologues According to InParanoid ?
Homophila - Possible Human Disease Homologs ?
Gene Ontology ?
Protein Domains ?
Potential Off-Target Effect Information
Number of Potential Off-Targets Based On 17 bp Matches ?
Number of Potential Off-Targets Based On 19 bp Matches ?
Number of Potential Off-Targets Based On 21 bp Matches ?
Number of Potential Off-Targets Based On 23 bp Matches ?
Number of Potential Off-Targets Based On 25 bp Matches ?
CAR Repeats ?
CAN Repeats ?

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